GingerSNP
Installed at the University of Minnesota


home | NCBI dbSNP | HapMap
Data build 2010.1
Server release 3.2.0

GingerSNP tools help you explore standard human SNP arrays by interaction, pathway, and function. Quickly identify SNPs thought to be associated with a disease, with a specific molecular function, or genomic locus. Select a SNP set from the list on the right to get started.

The exploration process makes use of NCBI Entrez web services and a local GingerSNP core knowledgebase. The knowledgebase is built from public information sets including NCBI dbSNP, NCBI Gene, HapMap, Pathway Commons, Reactome, and the Gene Ontology. more …


References

John A. Crow, Trevor Wennblom, Myron D. Gross, Exploration of human SNP arrays by pathway and function with GingerSNP. In preparation.

Choose an array
Affymetrix Human 20k cSNP Array
Affymetrix Human Genome-Wide Human SNP Array 6.0
Affymetrix Human Mapping 500k Array Set
Illumina HumanHap240S Genotyping BeadChip
Illumina HumanHap300-Duo Genotyping BeadChip
Human RefSNPs from NCBI dbSNP



by John Crow and Trevor Wennblom

source available under the MIT license at http://github.com/trevor/gingersnp/
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